Image Data Engineer

E11 Bio is on a mission to advance connectomics towards whole brain scale for humans and other mammals. We are a collaborative and interdisciplinary team of scientists and engineers engaged in a neuroscience moonshot project to develop a radical technology platform for scalable mammalian brain mapping. E11 Bio is a non-profit Convergent Research focused research organization located in Alameda, California, pursuing blue-skies neuroscience research yet operating like a nimble, tight-knit start-up. E11 Bio is seeking a motivated and enthusiastic image data scientist to develop new methods and tools for processing large-scale next-gen brain microscopy imaging data. You will run the image processing and quality control pipelines while working closely with the computation and wet lab science teams.

Responsibilities

• Develop new methods and tools for processing large-scale next-gen brain microscopy imaging data
• Deploy and optimize developed pipelines in large-scale cluster or cloud environments, ensuring efficient processing and scalability for imaging volumes exceeding petabyte-scale
• Develop robust quality control (QC) analysis tools for anomaly detection, assessing image integrity, and ensuring the accuracy and consistency of generated continuous imaging volumes
• Working closely with wet lab and microscopy scientists to optimize data analysis and acquisition processes
• Engaging in a culture of excellent documentation, preparation of reports, and presenting results internally and externally

Required qualifications

Preferred Qualifications (not required)

Who will love this job

We offer

$100,000 - $160,000 a year

E11 Bio, LLC is an Equal Employment Opportunity employer that proudly pursues and hires a diverse workforce. We do not make hiring or employment decisions on the basis of race, color, religion or religious belief, ethnic or national origin, nationality, sex, gender, gender-identity, sexual orientation, disability, age, military or veteran status, or any other basis protected by applicable local, state, or federal laws or prohibited by Company policy. We strive for a healthy and safe workplace and strictly prohibit harassment of any kind.

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