E11 Bio - Image Data Engineer

E11 Bio is on a mission to advance connectomics towards whole brain scale for humans and other mammals. We are a collaborative and interdisciplinary team of scientists and engineers engaged in a neuroscience moonshot project to develop a radical technology platform for scalable mammalian brain mapping. E11 Bio is a non-profit Convergent Research focused research organization located in Alameda, California, pursuing blue-skies neuroscience research yet operating like a nimble, tight-knit start-up. Read our technology roadmap

E11 Bio is seeking a motivated and enthusiastic image data scientist to develop new methods and tools for processing large-scale next-gen brain microscopy imaging data. You will run the image processing and quality control pipelines while working closely with the computation and wet lab science teams.

Responsibilities

• Develop new methods and tools for processing large-scale next-gen brain microscopy imaging data
• Deploy and optimize developed pipelines in large-scale cluster or cloud environments, ensuring efficient processing and scalability for imaging volumes exceeding petabyte-scale
• Develop robust quality control (QC) analysis tools for anomaly detection, assessing image integrity, and ensuring the accuracy and consistency of generated continuous imaging volumes
• Working closely with wet lab and microscopy scientists to optimize data analysis and acquisition processes
• Engaging in a culture of excellent documentation, preparation of reports, and presenting results internally and externally

Required qualifications

Preferred Qualifications (not required)

Who will love this job

We offer

E11 Bio, LLC is an Equal Employment Opportunity employer that proudly pursues and hires a diverse workforce. We do not make hiring or employment decisions on the basis of race, color, religion or religious belief, ethnic or national origin, nationality, sex, gender, gender-identity, sexual orientation, disability, age, military or veteran status, or any other basis protected by applicable local, state, or federal laws or prohibited by Company policy. We strive for a healthy and safe workplace and strictly prohibit harassment of any kind.

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